test_compression.py 6.3 KB

123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211
  1. """
  2. Tests compressed data parsing functionality for all
  3. of the parsers defined in parsers.py
  4. """
  5. import os
  6. from pathlib import Path
  7. import tarfile
  8. import zipfile
  9. import pytest
  10. from pandas import DataFrame
  11. import pandas._testing as tm
  12. pytestmark = pytest.mark.filterwarnings(
  13. "ignore:Passing a BlockManager to DataFrame:DeprecationWarning"
  14. )
  15. @pytest.fixture(params=[True, False])
  16. def buffer(request):
  17. return request.param
  18. @pytest.fixture
  19. def parser_and_data(all_parsers, csv1):
  20. parser = all_parsers
  21. with open(csv1, "rb") as f:
  22. data = f.read()
  23. expected = parser.read_csv(csv1)
  24. return parser, data, expected
  25. @pytest.mark.parametrize("compression", ["zip", "infer", "zip2"])
  26. def test_zip(parser_and_data, compression):
  27. parser, data, expected = parser_and_data
  28. with tm.ensure_clean("test_file.zip") as path:
  29. with zipfile.ZipFile(path, mode="w") as tmp:
  30. tmp.writestr("test_file", data)
  31. if compression == "zip2":
  32. with open(path, "rb") as f:
  33. result = parser.read_csv(f, compression="zip")
  34. else:
  35. result = parser.read_csv(path, compression=compression)
  36. tm.assert_frame_equal(result, expected)
  37. @pytest.mark.parametrize("compression", ["zip", "infer"])
  38. def test_zip_error_multiple_files(parser_and_data, compression):
  39. parser, data, expected = parser_and_data
  40. with tm.ensure_clean("combined_zip.zip") as path:
  41. inner_file_names = ["test_file", "second_file"]
  42. with zipfile.ZipFile(path, mode="w") as tmp:
  43. for file_name in inner_file_names:
  44. tmp.writestr(file_name, data)
  45. with pytest.raises(ValueError, match="Multiple files"):
  46. parser.read_csv(path, compression=compression)
  47. def test_zip_error_no_files(parser_and_data):
  48. parser, _, _ = parser_and_data
  49. with tm.ensure_clean() as path:
  50. with zipfile.ZipFile(path, mode="w"):
  51. pass
  52. with pytest.raises(ValueError, match="Zero files"):
  53. parser.read_csv(path, compression="zip")
  54. def test_zip_error_invalid_zip(parser_and_data):
  55. parser, _, _ = parser_and_data
  56. with tm.ensure_clean() as path:
  57. with open(path, "rb") as f:
  58. with pytest.raises(zipfile.BadZipFile, match="File is not a zip file"):
  59. parser.read_csv(f, compression="zip")
  60. @pytest.mark.parametrize("filename", [None, "test.{ext}"])
  61. def test_compression(
  62. request,
  63. parser_and_data,
  64. compression_only,
  65. buffer,
  66. filename,
  67. compression_to_extension,
  68. ):
  69. parser, data, expected = parser_and_data
  70. compress_type = compression_only
  71. ext = compression_to_extension[compress_type]
  72. filename = filename if filename is None else filename.format(ext=ext)
  73. if filename and buffer:
  74. request.applymarker(
  75. pytest.mark.xfail(
  76. reason="Cannot deduce compression from buffer of compressed data."
  77. )
  78. )
  79. with tm.ensure_clean(filename=filename) as path:
  80. tm.write_to_compressed(compress_type, path, data)
  81. compression = "infer" if filename else compress_type
  82. if buffer:
  83. with open(path, "rb") as f:
  84. result = parser.read_csv(f, compression=compression)
  85. else:
  86. result = parser.read_csv(path, compression=compression)
  87. tm.assert_frame_equal(result, expected)
  88. @pytest.mark.parametrize("ext", [None, "gz", "bz2"])
  89. def test_infer_compression(all_parsers, csv1, buffer, ext):
  90. # see gh-9770
  91. parser = all_parsers
  92. kwargs = {"index_col": 0, "parse_dates": True}
  93. expected = parser.read_csv(csv1, **kwargs)
  94. kwargs["compression"] = "infer"
  95. if buffer:
  96. with open(csv1, encoding="utf-8") as f:
  97. result = parser.read_csv(f, **kwargs)
  98. else:
  99. ext = "." + ext if ext else ""
  100. result = parser.read_csv(csv1 + ext, **kwargs)
  101. tm.assert_frame_equal(result, expected)
  102. def test_compression_utf_encoding(all_parsers, csv_dir_path, utf_value, encoding_fmt):
  103. # see gh-18071, gh-24130
  104. parser = all_parsers
  105. encoding = encoding_fmt.format(utf_value)
  106. path = os.path.join(csv_dir_path, f"utf{utf_value}_ex_small.zip")
  107. result = parser.read_csv(path, encoding=encoding, compression="zip", sep="\t")
  108. expected = DataFrame(
  109. {
  110. "Country": ["Venezuela", "Venezuela"],
  111. "Twitter": ["Hugo Chávez Frías", "Henrique Capriles R."],
  112. }
  113. )
  114. tm.assert_frame_equal(result, expected)
  115. @pytest.mark.parametrize("invalid_compression", ["sfark", "bz3", "zipper"])
  116. def test_invalid_compression(all_parsers, invalid_compression):
  117. parser = all_parsers
  118. compress_kwargs = {"compression": invalid_compression}
  119. msg = f"Unrecognized compression type: {invalid_compression}"
  120. with pytest.raises(ValueError, match=msg):
  121. parser.read_csv("test_file.zip", **compress_kwargs)
  122. def test_compression_tar_archive(all_parsers, csv_dir_path):
  123. parser = all_parsers
  124. path = os.path.join(csv_dir_path, "tar_csv.tar.gz")
  125. df = parser.read_csv(path)
  126. assert list(df.columns) == ["a"]
  127. def test_ignore_compression_extension(all_parsers):
  128. parser = all_parsers
  129. df = DataFrame({"a": [0, 1]})
  130. with tm.ensure_clean("test.csv") as path_csv:
  131. with tm.ensure_clean("test.csv.zip") as path_zip:
  132. # make sure to create un-compressed file with zip extension
  133. df.to_csv(path_csv, index=False)
  134. Path(path_zip).write_text(
  135. Path(path_csv).read_text(encoding="utf-8"), encoding="utf-8"
  136. )
  137. tm.assert_frame_equal(parser.read_csv(path_zip, compression=None), df)
  138. def test_writes_tar_gz(all_parsers):
  139. parser = all_parsers
  140. data = DataFrame(
  141. {
  142. "Country": ["Venezuela", "Venezuela"],
  143. "Twitter": ["Hugo Chávez Frías", "Henrique Capriles R."],
  144. }
  145. )
  146. with tm.ensure_clean("test.tar.gz") as tar_path:
  147. data.to_csv(tar_path, index=False)
  148. # test that read_csv infers .tar.gz to gzip:
  149. tm.assert_frame_equal(parser.read_csv(tar_path), data)
  150. # test that file is indeed gzipped:
  151. with tarfile.open(tar_path, "r:gz") as tar:
  152. result = parser.read_csv(
  153. tar.extractfile(tar.getnames()[0]), compression="infer"
  154. )
  155. tm.assert_frame_equal(result, data)