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- import numpy as np
- import pytest
- from pandas import (
- DataFrame,
- HDFStore,
- Index,
- Series,
- date_range,
- )
- from pandas.tests.io.pytables.common import (
- ensure_clean_store,
- tables,
- )
- pytestmark = [pytest.mark.single_cpu]
- def test_keys(setup_path):
- with ensure_clean_store(setup_path) as store:
- store["a"] = Series(
- np.arange(10, dtype=np.float64), index=date_range("2020-01-01", periods=10)
- )
- store["b"] = Series(
- range(10), dtype="float64", index=[f"i_{i}" for i in range(10)]
- )
- store["c"] = DataFrame(
- 1.1 * np.arange(120).reshape((30, 4)),
- columns=Index(list("ABCD"), dtype=object),
- index=Index([f"i-{i}" for i in range(30)], dtype=object),
- )
- assert len(store) == 3
- expected = {"/a", "/b", "/c"}
- assert set(store.keys()) == expected
- assert set(store) == expected
- def test_non_pandas_keys(tmp_path, setup_path):
- class Table1(tables.IsDescription):
- value1 = tables.Float32Col()
- class Table2(tables.IsDescription):
- value2 = tables.Float32Col()
- class Table3(tables.IsDescription):
- value3 = tables.Float32Col()
- path = tmp_path / setup_path
- with tables.open_file(path, mode="w") as h5file:
- group = h5file.create_group("/", "group")
- h5file.create_table(group, "table1", Table1, "Table 1")
- h5file.create_table(group, "table2", Table2, "Table 2")
- h5file.create_table(group, "table3", Table3, "Table 3")
- with HDFStore(path) as store:
- assert len(store.keys(include="native")) == 3
- expected = {"/group/table1", "/group/table2", "/group/table3"}
- assert set(store.keys(include="native")) == expected
- assert set(store.keys(include="pandas")) == set()
- for name in expected:
- df = store.get(name)
- assert len(df.columns) == 1
- def test_keys_illegal_include_keyword_value(setup_path):
- with ensure_clean_store(setup_path) as store:
- with pytest.raises(
- ValueError,
- match="`include` should be either 'pandas' or 'native' but is 'illegal'",
- ):
- store.keys(include="illegal")
- def test_keys_ignore_hdf_softlink(setup_path):
- # GH 20523
- # Puts a softlink into HDF file and rereads
- with ensure_clean_store(setup_path) as store:
- df = DataFrame({"A": range(5), "B": range(5)})
- store.put("df", df)
- assert store.keys() == ["/df"]
- store._handle.create_soft_link(store._handle.root, "symlink", "df")
- # Should ignore the softlink
- assert store.keys() == ["/df"]
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