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- import datetime
- from pathlib import Path
- import numpy as np
- import pytest
- import pandas as pd
- import pandas._testing as tm
- from pandas.util.version import Version
- pyreadstat = pytest.importorskip("pyreadstat")
- # TODO(CoW) - detection of chained assignment in cython
- # https://github.com/pandas-dev/pandas/issues/51315
- @pytest.mark.filterwarnings("ignore::pandas.errors.ChainedAssignmentError")
- @pytest.mark.filterwarnings("ignore:ChainedAssignmentError:FutureWarning")
- @pytest.mark.parametrize("path_klass", [lambda p: p, Path])
- def test_spss_labelled_num(path_klass, datapath):
- # test file from the Haven project (https://haven.tidyverse.org/)
- # Licence at LICENSES/HAVEN_LICENSE, LICENSES/HAVEN_MIT
- fname = path_klass(datapath("io", "data", "spss", "labelled-num.sav"))
- df = pd.read_spss(fname, convert_categoricals=True)
- expected = pd.DataFrame({"VAR00002": "This is one"}, index=[0])
- expected["VAR00002"] = pd.Categorical(expected["VAR00002"])
- tm.assert_frame_equal(df, expected)
- df = pd.read_spss(fname, convert_categoricals=False)
- expected = pd.DataFrame({"VAR00002": 1.0}, index=[0])
- tm.assert_frame_equal(df, expected)
- @pytest.mark.filterwarnings("ignore::pandas.errors.ChainedAssignmentError")
- @pytest.mark.filterwarnings("ignore:ChainedAssignmentError:FutureWarning")
- def test_spss_labelled_num_na(datapath):
- # test file from the Haven project (https://haven.tidyverse.org/)
- # Licence at LICENSES/HAVEN_LICENSE, LICENSES/HAVEN_MIT
- fname = datapath("io", "data", "spss", "labelled-num-na.sav")
- df = pd.read_spss(fname, convert_categoricals=True)
- expected = pd.DataFrame({"VAR00002": ["This is one", None]})
- expected["VAR00002"] = pd.Categorical(expected["VAR00002"])
- tm.assert_frame_equal(df, expected)
- df = pd.read_spss(fname, convert_categoricals=False)
- expected = pd.DataFrame({"VAR00002": [1.0, np.nan]})
- tm.assert_frame_equal(df, expected)
- @pytest.mark.filterwarnings("ignore::pandas.errors.ChainedAssignmentError")
- @pytest.mark.filterwarnings("ignore:ChainedAssignmentError:FutureWarning")
- def test_spss_labelled_str(datapath):
- # test file from the Haven project (https://haven.tidyverse.org/)
- # Licence at LICENSES/HAVEN_LICENSE, LICENSES/HAVEN_MIT
- fname = datapath("io", "data", "spss", "labelled-str.sav")
- df = pd.read_spss(fname, convert_categoricals=True)
- expected = pd.DataFrame({"gender": ["Male", "Female"]})
- expected["gender"] = pd.Categorical(expected["gender"])
- tm.assert_frame_equal(df, expected)
- df = pd.read_spss(fname, convert_categoricals=False)
- expected = pd.DataFrame({"gender": ["M", "F"]})
- tm.assert_frame_equal(df, expected)
- @pytest.mark.filterwarnings("ignore::pandas.errors.ChainedAssignmentError")
- @pytest.mark.filterwarnings("ignore:ChainedAssignmentError:FutureWarning")
- def test_spss_umlauts(datapath):
- # test file from the Haven project (https://haven.tidyverse.org/)
- # Licence at LICENSES/HAVEN_LICENSE, LICENSES/HAVEN_MIT
- fname = datapath("io", "data", "spss", "umlauts.sav")
- df = pd.read_spss(fname, convert_categoricals=True)
- expected = pd.DataFrame(
- {"var1": ["the ä umlaut", "the ü umlaut", "the ä umlaut", "the ö umlaut"]}
- )
- expected["var1"] = pd.Categorical(expected["var1"])
- tm.assert_frame_equal(df, expected)
- df = pd.read_spss(fname, convert_categoricals=False)
- expected = pd.DataFrame({"var1": [1.0, 2.0, 1.0, 3.0]})
- tm.assert_frame_equal(df, expected)
- def test_spss_usecols(datapath):
- # usecols must be list-like
- fname = datapath("io", "data", "spss", "labelled-num.sav")
- with pytest.raises(TypeError, match="usecols must be list-like."):
- pd.read_spss(fname, usecols="VAR00002")
- def test_spss_umlauts_dtype_backend(datapath, dtype_backend):
- # test file from the Haven project (https://haven.tidyverse.org/)
- # Licence at LICENSES/HAVEN_LICENSE, LICENSES/HAVEN_MIT
- fname = datapath("io", "data", "spss", "umlauts.sav")
- df = pd.read_spss(fname, convert_categoricals=False, dtype_backend=dtype_backend)
- expected = pd.DataFrame({"var1": [1.0, 2.0, 1.0, 3.0]}, dtype="Int64")
- if dtype_backend == "pyarrow":
- pa = pytest.importorskip("pyarrow")
- from pandas.arrays import ArrowExtensionArray
- expected = pd.DataFrame(
- {
- col: ArrowExtensionArray(pa.array(expected[col], from_pandas=True))
- for col in expected.columns
- }
- )
- tm.assert_frame_equal(df, expected)
- def test_invalid_dtype_backend():
- msg = (
- "dtype_backend numpy is invalid, only 'numpy_nullable' and "
- "'pyarrow' are allowed."
- )
- with pytest.raises(ValueError, match=msg):
- pd.read_spss("test", dtype_backend="numpy")
- @pytest.mark.filterwarnings("ignore::pandas.errors.ChainedAssignmentError")
- @pytest.mark.filterwarnings("ignore:ChainedAssignmentError:FutureWarning")
- def test_spss_metadata(datapath):
- # GH 54264
- fname = datapath("io", "data", "spss", "labelled-num.sav")
- df = pd.read_spss(fname)
- metadata = {
- "column_names": ["VAR00002"],
- "column_labels": [None],
- "column_names_to_labels": {"VAR00002": None},
- "file_encoding": "UTF-8",
- "number_columns": 1,
- "number_rows": 1,
- "variable_value_labels": {"VAR00002": {1.0: "This is one"}},
- "value_labels": {"labels0": {1.0: "This is one"}},
- "variable_to_label": {"VAR00002": "labels0"},
- "notes": [],
- "original_variable_types": {"VAR00002": "F8.0"},
- "readstat_variable_types": {"VAR00002": "double"},
- "table_name": None,
- "missing_ranges": {},
- "missing_user_values": {},
- "variable_storage_width": {"VAR00002": 8},
- "variable_display_width": {"VAR00002": 8},
- "variable_alignment": {"VAR00002": "unknown"},
- "variable_measure": {"VAR00002": "unknown"},
- "file_label": None,
- "file_format": "sav/zsav",
- }
- if Version(pyreadstat.__version__) >= Version("1.2.4"):
- metadata.update(
- {
- "creation_time": datetime.datetime(2015, 2, 6, 14, 33, 36),
- "modification_time": datetime.datetime(2015, 2, 6, 14, 33, 36),
- }
- )
- if Version(pyreadstat.__version__) >= Version("1.2.8"):
- metadata["mr_sets"] = {}
- tm.assert_dict_equal(df.attrs, metadata)
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