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|
- import bz2
- import datetime as dt
- from datetime import datetime
- import gzip
- import io
- import os
- import struct
- import tarfile
- import zipfile
- import numpy as np
- import pytest
- import pandas.util._test_decorators as td
- import pandas as pd
- from pandas import CategoricalDtype
- import pandas._testing as tm
- from pandas.core.frame import (
- DataFrame,
- Series,
- )
- from pandas.io.parsers import read_csv
- from pandas.io.stata import (
- CategoricalConversionWarning,
- InvalidColumnName,
- PossiblePrecisionLoss,
- StataMissingValue,
- StataReader,
- StataWriter,
- StataWriterUTF8,
- ValueLabelTypeMismatch,
- read_stata,
- )
- @pytest.fixture
- def mixed_frame():
- return DataFrame(
- {
- "a": [1, 2, 3, 4],
- "b": [1.0, 3.0, 27.0, 81.0],
- "c": ["Atlanta", "Birmingham", "Cincinnati", "Detroit"],
- }
- )
- @pytest.fixture
- def parsed_114(datapath):
- dta14_114 = datapath("io", "data", "stata", "stata5_114.dta")
- parsed_114 = read_stata(dta14_114, convert_dates=True)
- parsed_114.index.name = "index"
- return parsed_114
- class TestStata:
- def read_dta(self, file):
- # Legacy default reader configuration
- return read_stata(file, convert_dates=True)
- def read_csv(self, file):
- return read_csv(file, parse_dates=True)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_read_empty_dta(self, version):
- empty_ds = DataFrame(columns=["unit"])
- # GH 7369, make sure can read a 0-obs dta file
- with tm.ensure_clean() as path:
- empty_ds.to_stata(path, write_index=False, version=version)
- empty_ds2 = read_stata(path)
- tm.assert_frame_equal(empty_ds, empty_ds2)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_read_empty_dta_with_dtypes(self, version):
- # GH 46240
- # Fixing above bug revealed that types are not correctly preserved when
- # writing empty DataFrames
- empty_df_typed = DataFrame(
- {
- "i8": np.array([0], dtype=np.int8),
- "i16": np.array([0], dtype=np.int16),
- "i32": np.array([0], dtype=np.int32),
- "i64": np.array([0], dtype=np.int64),
- "u8": np.array([0], dtype=np.uint8),
- "u16": np.array([0], dtype=np.uint16),
- "u32": np.array([0], dtype=np.uint32),
- "u64": np.array([0], dtype=np.uint64),
- "f32": np.array([0], dtype=np.float32),
- "f64": np.array([0], dtype=np.float64),
- }
- )
- expected = empty_df_typed.copy()
- # No uint# support. Downcast since values in range for int#
- expected["u8"] = expected["u8"].astype(np.int8)
- expected["u16"] = expected["u16"].astype(np.int16)
- expected["u32"] = expected["u32"].astype(np.int32)
- # No int64 supported at all. Downcast since values in range for int32
- expected["u64"] = expected["u64"].astype(np.int32)
- expected["i64"] = expected["i64"].astype(np.int32)
- # GH 7369, make sure can read a 0-obs dta file
- with tm.ensure_clean() as path:
- empty_df_typed.to_stata(path, write_index=False, version=version)
- empty_reread = read_stata(path)
- tm.assert_frame_equal(expected, empty_reread)
- tm.assert_series_equal(expected.dtypes, empty_reread.dtypes)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_read_index_col_none(self, version):
- df = DataFrame({"a": range(5), "b": ["b1", "b2", "b3", "b4", "b5"]})
- # GH 7369, make sure can read a 0-obs dta file
- with tm.ensure_clean() as path:
- df.to_stata(path, write_index=False, version=version)
- read_df = read_stata(path)
- assert isinstance(read_df.index, pd.RangeIndex)
- expected = df.copy()
- expected["a"] = expected["a"].astype(np.int32)
- tm.assert_frame_equal(read_df, expected, check_index_type=True)
- @pytest.mark.parametrize("file", ["stata1_114", "stata1_117"])
- def test_read_dta1(self, file, datapath):
- file = datapath("io", "data", "stata", f"{file}.dta")
- parsed = self.read_dta(file)
- # Pandas uses np.nan as missing value.
- # Thus, all columns will be of type float, regardless of their name.
- expected = DataFrame(
- [(np.nan, np.nan, np.nan, np.nan, np.nan)],
- columns=["float_miss", "double_miss", "byte_miss", "int_miss", "long_miss"],
- )
- # this is an oddity as really the nan should be float64, but
- # the casting doesn't fail so need to match stata here
- expected["float_miss"] = expected["float_miss"].astype(np.float32)
- tm.assert_frame_equal(parsed, expected)
- def test_read_dta2(self, datapath):
- expected = DataFrame.from_records(
- [
- (
- datetime(2006, 11, 19, 23, 13, 20),
- 1479596223000,
- datetime(2010, 1, 20),
- datetime(2010, 1, 8),
- datetime(2010, 1, 1),
- datetime(1974, 7, 1),
- datetime(2010, 1, 1),
- datetime(2010, 1, 1),
- ),
- (
- datetime(1959, 12, 31, 20, 3, 20),
- -1479590,
- datetime(1953, 10, 2),
- datetime(1948, 6, 10),
- datetime(1955, 1, 1),
- datetime(1955, 7, 1),
- datetime(1955, 1, 1),
- datetime(2, 1, 1),
- ),
- (pd.NaT, pd.NaT, pd.NaT, pd.NaT, pd.NaT, pd.NaT, pd.NaT, pd.NaT),
- ],
- columns=[
- "datetime_c",
- "datetime_big_c",
- "date",
- "weekly_date",
- "monthly_date",
- "quarterly_date",
- "half_yearly_date",
- "yearly_date",
- ],
- )
- expected["yearly_date"] = expected["yearly_date"].astype("O")
- path1 = datapath("io", "data", "stata", "stata2_114.dta")
- path2 = datapath("io", "data", "stata", "stata2_115.dta")
- path3 = datapath("io", "data", "stata", "stata2_117.dta")
- with tm.assert_produces_warning(UserWarning):
- parsed_114 = self.read_dta(path1)
- with tm.assert_produces_warning(UserWarning):
- parsed_115 = self.read_dta(path2)
- with tm.assert_produces_warning(UserWarning):
- parsed_117 = self.read_dta(path3)
- # FIXME: don't leave commented-out
- # 113 is buggy due to limits of date format support in Stata
- # parsed_113 = self.read_dta(
- # datapath("io", "data", "stata", "stata2_113.dta")
- # )
- # FIXME: don't leave commented-out
- # buggy test because of the NaT comparison on certain platforms
- # Format 113 test fails since it does not support tc and tC formats
- # tm.assert_frame_equal(parsed_113, expected)
- tm.assert_frame_equal(parsed_114, expected, check_datetimelike_compat=True)
- tm.assert_frame_equal(parsed_115, expected, check_datetimelike_compat=True)
- tm.assert_frame_equal(parsed_117, expected, check_datetimelike_compat=True)
- @pytest.mark.parametrize(
- "file", ["stata3_113", "stata3_114", "stata3_115", "stata3_117"]
- )
- def test_read_dta3(self, file, datapath):
- file = datapath("io", "data", "stata", f"{file}.dta")
- parsed = self.read_dta(file)
- # match stata here
- expected = self.read_csv(datapath("io", "data", "stata", "stata3.csv"))
- expected = expected.astype(np.float32)
- expected["year"] = expected["year"].astype(np.int16)
- expected["quarter"] = expected["quarter"].astype(np.int8)
- tm.assert_frame_equal(parsed, expected)
- @pytest.mark.parametrize(
- "file", ["stata4_113", "stata4_114", "stata4_115", "stata4_117"]
- )
- def test_read_dta4(self, file, datapath):
- file = datapath("io", "data", "stata", f"{file}.dta")
- parsed = self.read_dta(file)
- expected = DataFrame.from_records(
- [
- ["one", "ten", "one", "one", "one"],
- ["two", "nine", "two", "two", "two"],
- ["three", "eight", "three", "three", "three"],
- ["four", "seven", 4, "four", "four"],
- ["five", "six", 5, np.nan, "five"],
- ["six", "five", 6, np.nan, "six"],
- ["seven", "four", 7, np.nan, "seven"],
- ["eight", "three", 8, np.nan, "eight"],
- ["nine", "two", 9, np.nan, "nine"],
- ["ten", "one", "ten", np.nan, "ten"],
- ],
- columns=[
- "fully_labeled",
- "fully_labeled2",
- "incompletely_labeled",
- "labeled_with_missings",
- "float_labelled",
- ],
- )
- # these are all categoricals
- for col in expected:
- orig = expected[col].copy()
- categories = np.asarray(expected["fully_labeled"][orig.notna()])
- if col == "incompletely_labeled":
- categories = orig
- cat = orig.astype("category")._values
- cat = cat.set_categories(categories, ordered=True)
- cat.categories.rename(None, inplace=True)
- expected[col] = cat
- # stata doesn't save .category metadata
- tm.assert_frame_equal(parsed, expected)
- # File containing strls
- def test_read_dta12(self, datapath):
- parsed_117 = self.read_dta(datapath("io", "data", "stata", "stata12_117.dta"))
- expected = DataFrame.from_records(
- [
- [1, "abc", "abcdefghi"],
- [3, "cba", "qwertywertyqwerty"],
- [93, "", "strl"],
- ],
- columns=["x", "y", "z"],
- )
- tm.assert_frame_equal(parsed_117, expected, check_dtype=False)
- def test_read_dta18(self, datapath):
- parsed_118 = self.read_dta(datapath("io", "data", "stata", "stata14_118.dta"))
- parsed_118["Bytes"] = parsed_118["Bytes"].astype("O")
- expected = DataFrame.from_records(
- [
- ["Cat", "Bogota", "Bogotá", 1, 1.0, "option b Ünicode", 1.0],
- ["Dog", "Boston", "Uzunköprü", np.nan, np.nan, np.nan, np.nan],
- ["Plane", "Rome", "Tromsø", 0, 0.0, "option a", 0.0],
- ["Potato", "Tokyo", "Elâzığ", -4, 4.0, 4, 4], # noqa: RUF001
- ["", "", "", 0, 0.3332999, "option a", 1 / 3.0],
- ],
- columns=[
- "Things",
- "Cities",
- "Unicode_Cities_Strl",
- "Ints",
- "Floats",
- "Bytes",
- "Longs",
- ],
- )
- expected["Floats"] = expected["Floats"].astype(np.float32)
- for col in parsed_118.columns:
- tm.assert_almost_equal(parsed_118[col], expected[col])
- with StataReader(datapath("io", "data", "stata", "stata14_118.dta")) as rdr:
- vl = rdr.variable_labels()
- vl_expected = {
- "Unicode_Cities_Strl": "Here are some strls with Ünicode chars",
- "Longs": "long data",
- "Things": "Here are some things",
- "Bytes": "byte data",
- "Ints": "int data",
- "Cities": "Here are some cities",
- "Floats": "float data",
- }
- tm.assert_dict_equal(vl, vl_expected)
- assert rdr.data_label == "This is a Ünicode data label"
- def test_read_write_dta5(self):
- original = DataFrame(
- [(np.nan, np.nan, np.nan, np.nan, np.nan)],
- columns=["float_miss", "double_miss", "byte_miss", "int_miss", "long_miss"],
- )
- original.index.name = "index"
- with tm.ensure_clean() as path:
- original.to_stata(path, convert_dates=None)
- written_and_read_again = self.read_dta(path)
- expected = original.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- def test_write_dta6(self, datapath):
- original = self.read_csv(datapath("io", "data", "stata", "stata3.csv"))
- original.index.name = "index"
- original.index = original.index.astype(np.int32)
- original["year"] = original["year"].astype(np.int32)
- original["quarter"] = original["quarter"].astype(np.int32)
- with tm.ensure_clean() as path:
- original.to_stata(path, convert_dates=None)
- written_and_read_again = self.read_dta(path)
- tm.assert_frame_equal(
- written_and_read_again.set_index("index"),
- original,
- check_index_type=False,
- )
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_read_write_dta10(self, version, using_infer_string):
- original = DataFrame(
- data=[["string", "object", 1, 1.1, np.datetime64("2003-12-25")]],
- columns=["string", "object", "integer", "floating", "datetime"],
- )
- original["object"] = Series(original["object"], dtype=object)
- original.index.name = "index"
- original.index = original.index.astype(np.int32)
- original["integer"] = original["integer"].astype(np.int32)
- with tm.ensure_clean() as path:
- original.to_stata(path, convert_dates={"datetime": "tc"}, version=version)
- written_and_read_again = self.read_dta(path)
- expected = original.copy()
- if using_infer_string:
- expected["object"] = expected["object"].astype("str")
- # original.index is np.int32, read index is np.int64
- tm.assert_frame_equal(
- written_and_read_again.set_index("index"),
- expected,
- check_index_type=False,
- )
- def test_stata_doc_examples(self):
- with tm.ensure_clean() as path:
- df = DataFrame(
- np.random.default_rng(2).standard_normal((10, 2)), columns=list("AB")
- )
- df.to_stata(path)
- def test_write_preserves_original(self):
- # 9795
- df = DataFrame(
- np.random.default_rng(2).standard_normal((5, 4)), columns=list("abcd")
- )
- df.loc[2, "a":"c"] = np.nan
- df_copy = df.copy()
- with tm.ensure_clean() as path:
- df.to_stata(path, write_index=False)
- tm.assert_frame_equal(df, df_copy)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_encoding(self, version, datapath):
- # GH 4626, proper encoding handling
- raw = read_stata(datapath("io", "data", "stata", "stata1_encoding.dta"))
- encoded = read_stata(datapath("io", "data", "stata", "stata1_encoding.dta"))
- result = encoded.kreis1849[0]
- expected = raw.kreis1849[0]
- assert result == expected
- assert isinstance(result, str)
- with tm.ensure_clean() as path:
- encoded.to_stata(path, write_index=False, version=version)
- reread_encoded = read_stata(path)
- tm.assert_frame_equal(encoded, reread_encoded)
- def test_read_write_dta11(self):
- original = DataFrame(
- [(1, 2, 3, 4)],
- columns=[
- "good",
- "b\u00E4d",
- "8number",
- "astringwithmorethan32characters______",
- ],
- )
- formatted = DataFrame(
- [(1, 2, 3, 4)],
- columns=["good", "b_d", "_8number", "astringwithmorethan32characters_"],
- )
- formatted.index.name = "index"
- formatted = formatted.astype(np.int32)
- with tm.ensure_clean() as path:
- with tm.assert_produces_warning(InvalidColumnName):
- original.to_stata(path, convert_dates=None)
- written_and_read_again = self.read_dta(path)
- expected = formatted.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_read_write_dta12(self, version):
- original = DataFrame(
- [(1, 2, 3, 4, 5, 6)],
- columns=[
- "astringwithmorethan32characters_1",
- "astringwithmorethan32characters_2",
- "+",
- "-",
- "short",
- "delete",
- ],
- )
- formatted = DataFrame(
- [(1, 2, 3, 4, 5, 6)],
- columns=[
- "astringwithmorethan32characters_",
- "_0astringwithmorethan32character",
- "_",
- "_1_",
- "_short",
- "_delete",
- ],
- )
- formatted.index.name = "index"
- formatted = formatted.astype(np.int32)
- with tm.ensure_clean() as path:
- with tm.assert_produces_warning(InvalidColumnName):
- original.to_stata(path, convert_dates=None, version=version)
- # should get a warning for that format.
- written_and_read_again = self.read_dta(path)
- expected = formatted.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- def test_read_write_dta13(self):
- s1 = Series(2**9, dtype=np.int16)
- s2 = Series(2**17, dtype=np.int32)
- s3 = Series(2**33, dtype=np.int64)
- original = DataFrame({"int16": s1, "int32": s2, "int64": s3})
- original.index.name = "index"
- formatted = original
- formatted["int64"] = formatted["int64"].astype(np.float64)
- with tm.ensure_clean() as path:
- original.to_stata(path)
- written_and_read_again = self.read_dta(path)
- expected = formatted.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- @pytest.mark.parametrize(
- "file", ["stata5_113", "stata5_114", "stata5_115", "stata5_117"]
- )
- def test_read_write_reread_dta14(self, file, parsed_114, version, datapath):
- file = datapath("io", "data", "stata", f"{file}.dta")
- parsed = self.read_dta(file)
- parsed.index.name = "index"
- tm.assert_frame_equal(parsed_114, parsed)
- with tm.ensure_clean() as path:
- parsed_114.to_stata(path, convert_dates={"date_td": "td"}, version=version)
- written_and_read_again = self.read_dta(path)
- expected = parsed_114.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- @pytest.mark.parametrize(
- "file", ["stata6_113", "stata6_114", "stata6_115", "stata6_117"]
- )
- def test_read_write_reread_dta15(self, file, datapath):
- expected = self.read_csv(datapath("io", "data", "stata", "stata6.csv"))
- expected["byte_"] = expected["byte_"].astype(np.int8)
- expected["int_"] = expected["int_"].astype(np.int16)
- expected["long_"] = expected["long_"].astype(np.int32)
- expected["float_"] = expected["float_"].astype(np.float32)
- expected["double_"] = expected["double_"].astype(np.float64)
- expected["date_td"] = expected["date_td"].apply(
- datetime.strptime, args=("%Y-%m-%d",)
- )
- file = datapath("io", "data", "stata", f"{file}.dta")
- parsed = self.read_dta(file)
- tm.assert_frame_equal(expected, parsed)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_timestamp_and_label(self, version):
- original = DataFrame([(1,)], columns=["variable"])
- time_stamp = datetime(2000, 2, 29, 14, 21)
- data_label = "This is a data file."
- with tm.ensure_clean() as path:
- original.to_stata(
- path, time_stamp=time_stamp, data_label=data_label, version=version
- )
- with StataReader(path) as reader:
- assert reader.time_stamp == "29 Feb 2000 14:21"
- assert reader.data_label == data_label
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_invalid_timestamp(self, version):
- original = DataFrame([(1,)], columns=["variable"])
- time_stamp = "01 Jan 2000, 00:00:00"
- with tm.ensure_clean() as path:
- msg = "time_stamp should be datetime type"
- with pytest.raises(ValueError, match=msg):
- original.to_stata(path, time_stamp=time_stamp, version=version)
- assert not os.path.isfile(path)
- def test_numeric_column_names(self):
- original = DataFrame(np.reshape(np.arange(25.0), (5, 5)))
- original.index.name = "index"
- with tm.ensure_clean() as path:
- # should get a warning for that format.
- with tm.assert_produces_warning(InvalidColumnName):
- original.to_stata(path)
- written_and_read_again = self.read_dta(path)
- written_and_read_again = written_and_read_again.set_index("index")
- columns = list(written_and_read_again.columns)
- convert_col_name = lambda x: int(x[1])
- written_and_read_again.columns = map(convert_col_name, columns)
- expected = original.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(expected, written_and_read_again)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_nan_to_missing_value(self, version):
- s1 = Series(np.arange(4.0), dtype=np.float32)
- s2 = Series(np.arange(4.0), dtype=np.float64)
- s1[::2] = np.nan
- s2[1::2] = np.nan
- original = DataFrame({"s1": s1, "s2": s2})
- original.index.name = "index"
- with tm.ensure_clean() as path:
- original.to_stata(path, version=version)
- written_and_read_again = self.read_dta(path)
- written_and_read_again = written_and_read_again.set_index("index")
- expected = original.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again, expected)
- def test_no_index(self):
- columns = ["x", "y"]
- original = DataFrame(np.reshape(np.arange(10.0), (5, 2)), columns=columns)
- original.index.name = "index_not_written"
- with tm.ensure_clean() as path:
- original.to_stata(path, write_index=False)
- written_and_read_again = self.read_dta(path)
- with pytest.raises(KeyError, match=original.index.name):
- written_and_read_again["index_not_written"]
- def test_string_no_dates(self):
- s1 = Series(["a", "A longer string"])
- s2 = Series([1.0, 2.0], dtype=np.float64)
- original = DataFrame({"s1": s1, "s2": s2})
- original.index.name = "index"
- with tm.ensure_clean() as path:
- original.to_stata(path)
- written_and_read_again = self.read_dta(path)
- expected = original.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- def test_large_value_conversion(self):
- s0 = Series([1, 99], dtype=np.int8)
- s1 = Series([1, 127], dtype=np.int8)
- s2 = Series([1, 2**15 - 1], dtype=np.int16)
- s3 = Series([1, 2**63 - 1], dtype=np.int64)
- original = DataFrame({"s0": s0, "s1": s1, "s2": s2, "s3": s3})
- original.index.name = "index"
- with tm.ensure_clean() as path:
- with tm.assert_produces_warning(PossiblePrecisionLoss):
- original.to_stata(path)
- written_and_read_again = self.read_dta(path)
- modified = original.copy()
- modified["s1"] = Series(modified["s1"], dtype=np.int16)
- modified["s2"] = Series(modified["s2"], dtype=np.int32)
- modified["s3"] = Series(modified["s3"], dtype=np.float64)
- modified.index = original.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), modified)
- def test_dates_invalid_column(self):
- original = DataFrame([datetime(2006, 11, 19, 23, 13, 20)])
- original.index.name = "index"
- with tm.ensure_clean() as path:
- with tm.assert_produces_warning(InvalidColumnName):
- original.to_stata(path, convert_dates={0: "tc"})
- written_and_read_again = self.read_dta(path)
- modified = original.copy()
- modified.columns = ["_0"]
- modified.index = original.index.astype(np.int32)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), modified)
- def test_105(self, datapath):
- # Data obtained from:
- # http://go.worldbank.org/ZXY29PVJ21
- dpath = datapath("io", "data", "stata", "S4_EDUC1.dta")
- df = read_stata(dpath)
- df0 = [[1, 1, 3, -2], [2, 1, 2, -2], [4, 1, 1, -2]]
- df0 = DataFrame(df0)
- df0.columns = ["clustnum", "pri_schl", "psch_num", "psch_dis"]
- df0["clustnum"] = df0["clustnum"].astype(np.int16)
- df0["pri_schl"] = df0["pri_schl"].astype(np.int8)
- df0["psch_num"] = df0["psch_num"].astype(np.int8)
- df0["psch_dis"] = df0["psch_dis"].astype(np.float32)
- tm.assert_frame_equal(df.head(3), df0)
- def test_value_labels_old_format(self, datapath):
- # GH 19417
- #
- # Test that value_labels() returns an empty dict if the file format
- # predates supporting value labels.
- dpath = datapath("io", "data", "stata", "S4_EDUC1.dta")
- with StataReader(dpath) as reader:
- assert reader.value_labels() == {}
- def test_date_export_formats(self):
- columns = ["tc", "td", "tw", "tm", "tq", "th", "ty"]
- conversions = {c: c for c in columns}
- data = [datetime(2006, 11, 20, 23, 13, 20)] * len(columns)
- original = DataFrame([data], columns=columns)
- original.index.name = "index"
- expected_values = [
- datetime(2006, 11, 20, 23, 13, 20), # Time
- datetime(2006, 11, 20), # Day
- datetime(2006, 11, 19), # Week
- datetime(2006, 11, 1), # Month
- datetime(2006, 10, 1), # Quarter year
- datetime(2006, 7, 1), # Half year
- datetime(2006, 1, 1),
- ] # Year
- expected = DataFrame(
- [expected_values],
- index=pd.Index([0], dtype=np.int32, name="index"),
- columns=columns,
- )
- with tm.ensure_clean() as path:
- original.to_stata(path, convert_dates=conversions)
- written_and_read_again = self.read_dta(path)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- def test_write_missing_strings(self):
- original = DataFrame([["1"], [None]], columns=["foo"])
- expected = DataFrame(
- [["1"], [""]],
- index=pd.Index([0, 1], dtype=np.int32, name="index"),
- columns=["foo"],
- )
- with tm.ensure_clean() as path:
- original.to_stata(path)
- written_and_read_again = self.read_dta(path)
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- @pytest.mark.parametrize("byteorder", [">", "<"])
- def test_bool_uint(self, byteorder, version):
- s0 = Series([0, 1, True], dtype=np.bool_)
- s1 = Series([0, 1, 100], dtype=np.uint8)
- s2 = Series([0, 1, 255], dtype=np.uint8)
- s3 = Series([0, 1, 2**15 - 100], dtype=np.uint16)
- s4 = Series([0, 1, 2**16 - 1], dtype=np.uint16)
- s5 = Series([0, 1, 2**31 - 100], dtype=np.uint32)
- s6 = Series([0, 1, 2**32 - 1], dtype=np.uint32)
- original = DataFrame(
- {"s0": s0, "s1": s1, "s2": s2, "s3": s3, "s4": s4, "s5": s5, "s6": s6}
- )
- original.index.name = "index"
- expected = original.copy()
- expected.index = original.index.astype(np.int32)
- expected_types = (
- np.int8,
- np.int8,
- np.int16,
- np.int16,
- np.int32,
- np.int32,
- np.float64,
- )
- for c, t in zip(expected.columns, expected_types):
- expected[c] = expected[c].astype(t)
- with tm.ensure_clean() as path:
- original.to_stata(path, byteorder=byteorder, version=version)
- written_and_read_again = self.read_dta(path)
- written_and_read_again = written_and_read_again.set_index("index")
- tm.assert_frame_equal(written_and_read_again, expected)
- def test_variable_labels(self, datapath):
- with StataReader(datapath("io", "data", "stata", "stata7_115.dta")) as rdr:
- sr_115 = rdr.variable_labels()
- with StataReader(datapath("io", "data", "stata", "stata7_117.dta")) as rdr:
- sr_117 = rdr.variable_labels()
- keys = ("var1", "var2", "var3")
- labels = ("label1", "label2", "label3")
- for k, v in sr_115.items():
- assert k in sr_117
- assert v == sr_117[k]
- assert k in keys
- assert v in labels
- def test_minimal_size_col(self):
- str_lens = (1, 100, 244)
- s = {}
- for str_len in str_lens:
- s["s" + str(str_len)] = Series(
- ["a" * str_len, "b" * str_len, "c" * str_len]
- )
- original = DataFrame(s)
- with tm.ensure_clean() as path:
- original.to_stata(path, write_index=False)
- with StataReader(path) as sr:
- sr._ensure_open() # The `_*list` variables are initialized here
- for variable, fmt, typ in zip(sr._varlist, sr._fmtlist, sr._typlist):
- assert int(variable[1:]) == int(fmt[1:-1])
- assert int(variable[1:]) == typ
- def test_excessively_long_string(self):
- str_lens = (1, 244, 500)
- s = {}
- for str_len in str_lens:
- s["s" + str(str_len)] = Series(
- ["a" * str_len, "b" * str_len, "c" * str_len]
- )
- original = DataFrame(s)
- msg = (
- r"Fixed width strings in Stata \.dta files are limited to 244 "
- r"\(or fewer\)\ncharacters\. Column 's500' does not satisfy "
- r"this restriction\. Use the\n'version=117' parameter to write "
- r"the newer \(Stata 13 and later\) format\."
- )
- with pytest.raises(ValueError, match=msg):
- with tm.ensure_clean() as path:
- original.to_stata(path)
- def test_missing_value_generator(self):
- types = ("b", "h", "l")
- df = DataFrame([[0.0]], columns=["float_"])
- with tm.ensure_clean() as path:
- df.to_stata(path)
- with StataReader(path) as rdr:
- valid_range = rdr.VALID_RANGE
- expected_values = ["." + chr(97 + i) for i in range(26)]
- expected_values.insert(0, ".")
- for t in types:
- offset = valid_range[t][1]
- for i in range(27):
- val = StataMissingValue(offset + 1 + i)
- assert val.string == expected_values[i]
- # Test extremes for floats
- val = StataMissingValue(struct.unpack("<f", b"\x00\x00\x00\x7f")[0])
- assert val.string == "."
- val = StataMissingValue(struct.unpack("<f", b"\x00\xd0\x00\x7f")[0])
- assert val.string == ".z"
- # Test extremes for floats
- val = StataMissingValue(
- struct.unpack("<d", b"\x00\x00\x00\x00\x00\x00\xe0\x7f")[0]
- )
- assert val.string == "."
- val = StataMissingValue(
- struct.unpack("<d", b"\x00\x00\x00\x00\x00\x1a\xe0\x7f")[0]
- )
- assert val.string == ".z"
- @pytest.mark.parametrize("file", ["stata8_113", "stata8_115", "stata8_117"])
- def test_missing_value_conversion(self, file, datapath):
- columns = ["int8_", "int16_", "int32_", "float32_", "float64_"]
- smv = StataMissingValue(101)
- keys = sorted(smv.MISSING_VALUES.keys())
- data = []
- for i in range(27):
- row = [StataMissingValue(keys[i + (j * 27)]) for j in range(5)]
- data.append(row)
- expected = DataFrame(data, columns=columns)
- parsed = read_stata(
- datapath("io", "data", "stata", f"{file}.dta"), convert_missing=True
- )
- tm.assert_frame_equal(parsed, expected)
- def test_big_dates(self, datapath):
- yr = [1960, 2000, 9999, 100, 2262, 1677]
- mo = [1, 1, 12, 1, 4, 9]
- dd = [1, 1, 31, 1, 22, 23]
- hr = [0, 0, 23, 0, 0, 0]
- mm = [0, 0, 59, 0, 0, 0]
- ss = [0, 0, 59, 0, 0, 0]
- expected = []
- for year, month, day, hour, minute, second in zip(yr, mo, dd, hr, mm, ss):
- row = []
- for j in range(7):
- if j == 0:
- row.append(datetime(year, month, day, hour, minute, second))
- elif j == 6:
- row.append(datetime(year, 1, 1))
- else:
- row.append(datetime(year, month, day))
- expected.append(row)
- expected.append([pd.NaT] * 7)
- columns = [
- "date_tc",
- "date_td",
- "date_tw",
- "date_tm",
- "date_tq",
- "date_th",
- "date_ty",
- ]
- # Fixes for weekly, quarterly,half,year
- expected[2][2] = datetime(9999, 12, 24)
- expected[2][3] = datetime(9999, 12, 1)
- expected[2][4] = datetime(9999, 10, 1)
- expected[2][5] = datetime(9999, 7, 1)
- expected[4][2] = datetime(2262, 4, 16)
- expected[4][3] = expected[4][4] = datetime(2262, 4, 1)
- expected[4][5] = expected[4][6] = datetime(2262, 1, 1)
- expected[5][2] = expected[5][3] = expected[5][4] = datetime(1677, 10, 1)
- expected[5][5] = expected[5][6] = datetime(1678, 1, 1)
- expected = DataFrame(expected, columns=columns, dtype=object)
- parsed_115 = read_stata(datapath("io", "data", "stata", "stata9_115.dta"))
- parsed_117 = read_stata(datapath("io", "data", "stata", "stata9_117.dta"))
- tm.assert_frame_equal(expected, parsed_115, check_datetimelike_compat=True)
- tm.assert_frame_equal(expected, parsed_117, check_datetimelike_compat=True)
- date_conversion = {c: c[-2:] for c in columns}
- # {c : c[-2:] for c in columns}
- with tm.ensure_clean() as path:
- expected.index.name = "index"
- expected.to_stata(path, convert_dates=date_conversion)
- written_and_read_again = self.read_dta(path)
- tm.assert_frame_equal(
- written_and_read_again.set_index("index"),
- expected.set_index(expected.index.astype(np.int32)),
- check_datetimelike_compat=True,
- )
- def test_dtype_conversion(self, datapath):
- expected = self.read_csv(datapath("io", "data", "stata", "stata6.csv"))
- expected["byte_"] = expected["byte_"].astype(np.int8)
- expected["int_"] = expected["int_"].astype(np.int16)
- expected["long_"] = expected["long_"].astype(np.int32)
- expected["float_"] = expected["float_"].astype(np.float32)
- expected["double_"] = expected["double_"].astype(np.float64)
- expected["date_td"] = expected["date_td"].apply(
- datetime.strptime, args=("%Y-%m-%d",)
- )
- no_conversion = read_stata(
- datapath("io", "data", "stata", "stata6_117.dta"), convert_dates=True
- )
- tm.assert_frame_equal(expected, no_conversion)
- conversion = read_stata(
- datapath("io", "data", "stata", "stata6_117.dta"),
- convert_dates=True,
- preserve_dtypes=False,
- )
- # read_csv types are the same
- expected = self.read_csv(datapath("io", "data", "stata", "stata6.csv"))
- expected["date_td"] = expected["date_td"].apply(
- datetime.strptime, args=("%Y-%m-%d",)
- )
- tm.assert_frame_equal(expected, conversion)
- def test_drop_column(self, datapath):
- expected = self.read_csv(datapath("io", "data", "stata", "stata6.csv"))
- expected["byte_"] = expected["byte_"].astype(np.int8)
- expected["int_"] = expected["int_"].astype(np.int16)
- expected["long_"] = expected["long_"].astype(np.int32)
- expected["float_"] = expected["float_"].astype(np.float32)
- expected["double_"] = expected["double_"].astype(np.float64)
- expected["date_td"] = expected["date_td"].apply(
- datetime.strptime, args=("%Y-%m-%d",)
- )
- columns = ["byte_", "int_", "long_"]
- expected = expected[columns]
- dropped = read_stata(
- datapath("io", "data", "stata", "stata6_117.dta"),
- convert_dates=True,
- columns=columns,
- )
- tm.assert_frame_equal(expected, dropped)
- # See PR 10757
- columns = ["int_", "long_", "byte_"]
- expected = expected[columns]
- reordered = read_stata(
- datapath("io", "data", "stata", "stata6_117.dta"),
- convert_dates=True,
- columns=columns,
- )
- tm.assert_frame_equal(expected, reordered)
- msg = "columns contains duplicate entries"
- with pytest.raises(ValueError, match=msg):
- columns = ["byte_", "byte_"]
- read_stata(
- datapath("io", "data", "stata", "stata6_117.dta"),
- convert_dates=True,
- columns=columns,
- )
- msg = "The following columns were not found in the Stata data set: not_found"
- with pytest.raises(ValueError, match=msg):
- columns = ["byte_", "int_", "long_", "not_found"]
- read_stata(
- datapath("io", "data", "stata", "stata6_117.dta"),
- convert_dates=True,
- columns=columns,
- )
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- @pytest.mark.filterwarnings(
- "ignore:\\nStata value:pandas.io.stata.ValueLabelTypeMismatch"
- )
- def test_categorical_writing(self, version):
- original = DataFrame.from_records(
- [
- ["one", "ten", "one", "one", "one", 1],
- ["two", "nine", "two", "two", "two", 2],
- ["three", "eight", "three", "three", "three", 3],
- ["four", "seven", 4, "four", "four", 4],
- ["five", "six", 5, np.nan, "five", 5],
- ["six", "five", 6, np.nan, "six", 6],
- ["seven", "four", 7, np.nan, "seven", 7],
- ["eight", "three", 8, np.nan, "eight", 8],
- ["nine", "two", 9, np.nan, "nine", 9],
- ["ten", "one", "ten", np.nan, "ten", 10],
- ],
- columns=[
- "fully_labeled",
- "fully_labeled2",
- "incompletely_labeled",
- "labeled_with_missings",
- "float_labelled",
- "unlabeled",
- ],
- )
- expected = original.copy()
- # these are all categoricals
- original = pd.concat(
- [original[col].astype("category") for col in original], axis=1
- )
- expected.index = expected.index.set_names("index").astype(np.int32)
- expected["incompletely_labeled"] = expected["incompletely_labeled"].apply(str)
- expected["unlabeled"] = expected["unlabeled"].apply(str)
- for col in expected:
- orig = expected[col].copy()
- cat = orig.astype("category")._values
- cat = cat.as_ordered()
- if col == "unlabeled":
- cat = cat.set_categories(orig, ordered=True)
- cat.categories.rename(None, inplace=True)
- expected[col] = cat
- with tm.ensure_clean() as path:
- original.to_stata(path, version=version)
- written_and_read_again = self.read_dta(path)
- res = written_and_read_again.set_index("index")
- tm.assert_frame_equal(res, expected)
- def test_categorical_warnings_and_errors(self):
- # Warning for non-string labels
- # Error for labels too long
- original = DataFrame.from_records(
- [["a" * 10000], ["b" * 10000], ["c" * 10000], ["d" * 10000]],
- columns=["Too_long"],
- )
- original = pd.concat(
- [original[col].astype("category") for col in original], axis=1
- )
- with tm.ensure_clean() as path:
- msg = (
- "Stata value labels for a single variable must have "
- r"a combined length less than 32,000 characters\."
- )
- with pytest.raises(ValueError, match=msg):
- original.to_stata(path)
- original = DataFrame.from_records(
- [["a"], ["b"], ["c"], ["d"], [1]], columns=["Too_long"]
- )
- original = pd.concat(
- [original[col].astype("category") for col in original], axis=1
- )
- with tm.assert_produces_warning(ValueLabelTypeMismatch):
- original.to_stata(path)
- # should get a warning for mixed content
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_categorical_with_stata_missing_values(self, version):
- values = [["a" + str(i)] for i in range(120)]
- values.append([np.nan])
- original = DataFrame.from_records(values, columns=["many_labels"])
- original = pd.concat(
- [original[col].astype("category") for col in original], axis=1
- )
- original.index.name = "index"
- with tm.ensure_clean() as path:
- original.to_stata(path, version=version)
- written_and_read_again = self.read_dta(path)
- res = written_and_read_again.set_index("index")
- expected = original.copy()
- for col in expected:
- cat = expected[col]._values
- new_cats = cat.remove_unused_categories().categories
- cat = cat.set_categories(new_cats, ordered=True)
- expected[col] = cat
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(res, expected)
- @pytest.mark.parametrize("file", ["stata10_115", "stata10_117"])
- def test_categorical_order(self, file, datapath):
- # Directly construct using expected codes
- # Format is is_cat, col_name, labels (in order), underlying data
- expected = [
- (True, "ordered", ["a", "b", "c", "d", "e"], np.arange(5)),
- (True, "reverse", ["a", "b", "c", "d", "e"], np.arange(5)[::-1]),
- (True, "noorder", ["a", "b", "c", "d", "e"], np.array([2, 1, 4, 0, 3])),
- (True, "floating", ["a", "b", "c", "d", "e"], np.arange(0, 5)),
- (True, "float_missing", ["a", "d", "e"], np.array([0, 1, 2, -1, -1])),
- (False, "nolabel", [1.0, 2.0, 3.0, 4.0, 5.0], np.arange(5)),
- (True, "int32_mixed", ["d", 2, "e", "b", "a"], np.arange(5)),
- ]
- cols = []
- for is_cat, col, labels, codes in expected:
- if is_cat:
- cols.append(
- (col, pd.Categorical.from_codes(codes, labels, ordered=True))
- )
- else:
- cols.append((col, Series(labels, dtype=np.float32)))
- expected = DataFrame.from_dict(dict(cols))
- # Read with and with out categoricals, ensure order is identical
- file = datapath("io", "data", "stata", f"{file}.dta")
- parsed = read_stata(file)
- tm.assert_frame_equal(expected, parsed)
- # Check identity of codes
- for col in expected:
- if isinstance(expected[col].dtype, CategoricalDtype):
- tm.assert_series_equal(expected[col].cat.codes, parsed[col].cat.codes)
- tm.assert_index_equal(
- expected[col].cat.categories, parsed[col].cat.categories
- )
- @pytest.mark.parametrize("file", ["stata11_115", "stata11_117"])
- def test_categorical_sorting(self, file, datapath):
- parsed = read_stata(datapath("io", "data", "stata", f"{file}.dta"))
- # Sort based on codes, not strings
- parsed = parsed.sort_values("srh", na_position="first")
- # Don't sort index
- parsed.index = pd.RangeIndex(len(parsed))
- codes = [-1, -1, 0, 1, 1, 1, 2, 2, 3, 4]
- categories = ["Poor", "Fair", "Good", "Very good", "Excellent"]
- cat = pd.Categorical.from_codes(
- codes=codes, categories=categories, ordered=True
- )
- expected = Series(cat, name="srh")
- tm.assert_series_equal(expected, parsed["srh"])
- @pytest.mark.parametrize("file", ["stata10_115", "stata10_117"])
- def test_categorical_ordering(self, file, datapath):
- file = datapath("io", "data", "stata", f"{file}.dta")
- parsed = read_stata(file)
- parsed_unordered = read_stata(file, order_categoricals=False)
- for col in parsed:
- if not isinstance(parsed[col].dtype, CategoricalDtype):
- continue
- assert parsed[col].cat.ordered
- assert not parsed_unordered[col].cat.ordered
- @pytest.mark.filterwarnings("ignore::UserWarning")
- @pytest.mark.parametrize(
- "file",
- [
- "stata1_117",
- "stata2_117",
- "stata3_117",
- "stata4_117",
- "stata5_117",
- "stata6_117",
- "stata7_117",
- "stata8_117",
- "stata9_117",
- "stata10_117",
- "stata11_117",
- ],
- )
- @pytest.mark.parametrize("chunksize", [1, 2])
- @pytest.mark.parametrize("convert_categoricals", [False, True])
- @pytest.mark.parametrize("convert_dates", [False, True])
- def test_read_chunks_117(
- self, file, chunksize, convert_categoricals, convert_dates, datapath
- ):
- fname = datapath("io", "data", "stata", f"{file}.dta")
- parsed = read_stata(
- fname,
- convert_categoricals=convert_categoricals,
- convert_dates=convert_dates,
- )
- with read_stata(
- fname,
- iterator=True,
- convert_categoricals=convert_categoricals,
- convert_dates=convert_dates,
- ) as itr:
- pos = 0
- for j in range(5):
- try:
- chunk = itr.read(chunksize)
- except StopIteration:
- break
- from_frame = parsed.iloc[pos : pos + chunksize, :].copy()
- from_frame = self._convert_categorical(from_frame)
- tm.assert_frame_equal(
- from_frame, chunk, check_dtype=False, check_datetimelike_compat=True
- )
- pos += chunksize
- @staticmethod
- def _convert_categorical(from_frame: DataFrame) -> DataFrame:
- """
- Emulate the categorical casting behavior we expect from roundtripping.
- """
- for col in from_frame:
- ser = from_frame[col]
- if isinstance(ser.dtype, CategoricalDtype):
- cat = ser._values.remove_unused_categories()
- if cat.categories.dtype == object:
- categories = pd.Index._with_infer(cat.categories._values)
- cat = cat.set_categories(categories)
- elif cat.categories.dtype == "string" and len(cat.categories) == 0:
- # if the read categories are empty, it comes back as object dtype
- categories = cat.categories.astype(object)
- cat = cat.set_categories(categories)
- from_frame[col] = cat
- return from_frame
- def test_iterator(self, datapath):
- fname = datapath("io", "data", "stata", "stata3_117.dta")
- parsed = read_stata(fname)
- with read_stata(fname, iterator=True) as itr:
- chunk = itr.read(5)
- tm.assert_frame_equal(parsed.iloc[0:5, :], chunk)
- with read_stata(fname, chunksize=5) as itr:
- chunk = list(itr)
- tm.assert_frame_equal(parsed.iloc[0:5, :], chunk[0])
- with read_stata(fname, iterator=True) as itr:
- chunk = itr.get_chunk(5)
- tm.assert_frame_equal(parsed.iloc[0:5, :], chunk)
- with read_stata(fname, chunksize=5) as itr:
- chunk = itr.get_chunk()
- tm.assert_frame_equal(parsed.iloc[0:5, :], chunk)
- # GH12153
- with read_stata(fname, chunksize=4) as itr:
- from_chunks = pd.concat(itr)
- tm.assert_frame_equal(parsed, from_chunks)
- @pytest.mark.filterwarnings("ignore::UserWarning")
- @pytest.mark.parametrize(
- "file",
- [
- "stata2_115",
- "stata3_115",
- "stata4_115",
- "stata5_115",
- "stata6_115",
- "stata7_115",
- "stata8_115",
- "stata9_115",
- "stata10_115",
- "stata11_115",
- ],
- )
- @pytest.mark.parametrize("chunksize", [1, 2])
- @pytest.mark.parametrize("convert_categoricals", [False, True])
- @pytest.mark.parametrize("convert_dates", [False, True])
- def test_read_chunks_115(
- self, file, chunksize, convert_categoricals, convert_dates, datapath
- ):
- fname = datapath("io", "data", "stata", f"{file}.dta")
- # Read the whole file
- parsed = read_stata(
- fname,
- convert_categoricals=convert_categoricals,
- convert_dates=convert_dates,
- )
- # Compare to what we get when reading by chunk
- with read_stata(
- fname,
- iterator=True,
- convert_dates=convert_dates,
- convert_categoricals=convert_categoricals,
- ) as itr:
- pos = 0
- for j in range(5):
- try:
- chunk = itr.read(chunksize)
- except StopIteration:
- break
- from_frame = parsed.iloc[pos : pos + chunksize, :].copy()
- from_frame = self._convert_categorical(from_frame)
- tm.assert_frame_equal(
- from_frame, chunk, check_dtype=False, check_datetimelike_compat=True
- )
- pos += chunksize
- def test_read_chunks_columns(self, datapath):
- fname = datapath("io", "data", "stata", "stata3_117.dta")
- columns = ["quarter", "cpi", "m1"]
- chunksize = 2
- parsed = read_stata(fname, columns=columns)
- with read_stata(fname, iterator=True) as itr:
- pos = 0
- for j in range(5):
- chunk = itr.read(chunksize, columns=columns)
- if chunk is None:
- break
- from_frame = parsed.iloc[pos : pos + chunksize, :]
- tm.assert_frame_equal(from_frame, chunk, check_dtype=False)
- pos += chunksize
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_write_variable_labels(self, version, mixed_frame):
- # GH 13631, add support for writing variable labels
- mixed_frame.index.name = "index"
- variable_labels = {"a": "City Rank", "b": "City Exponent", "c": "City"}
- with tm.ensure_clean() as path:
- mixed_frame.to_stata(path, variable_labels=variable_labels, version=version)
- with StataReader(path) as sr:
- read_labels = sr.variable_labels()
- expected_labels = {
- "index": "",
- "a": "City Rank",
- "b": "City Exponent",
- "c": "City",
- }
- assert read_labels == expected_labels
- variable_labels["index"] = "The Index"
- with tm.ensure_clean() as path:
- mixed_frame.to_stata(path, variable_labels=variable_labels, version=version)
- with StataReader(path) as sr:
- read_labels = sr.variable_labels()
- assert read_labels == variable_labels
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_invalid_variable_labels(self, version, mixed_frame):
- mixed_frame.index.name = "index"
- variable_labels = {"a": "very long" * 10, "b": "City Exponent", "c": "City"}
- with tm.ensure_clean() as path:
- msg = "Variable labels must be 80 characters or fewer"
- with pytest.raises(ValueError, match=msg):
- mixed_frame.to_stata(
- path, variable_labels=variable_labels, version=version
- )
- @pytest.mark.parametrize("version", [114, 117])
- def test_invalid_variable_label_encoding(self, version, mixed_frame):
- mixed_frame.index.name = "index"
- variable_labels = {"a": "very long" * 10, "b": "City Exponent", "c": "City"}
- variable_labels["a"] = "invalid character Œ"
- with tm.ensure_clean() as path:
- with pytest.raises(
- ValueError, match="Variable labels must contain only characters"
- ):
- mixed_frame.to_stata(
- path, variable_labels=variable_labels, version=version
- )
- def test_write_variable_label_errors(self, mixed_frame):
- values = ["\u03A1", "\u0391", "\u039D", "\u0394", "\u0391", "\u03A3"]
- variable_labels_utf8 = {
- "a": "City Rank",
- "b": "City Exponent",
- "c": "".join(values),
- }
- msg = (
- "Variable labels must contain only characters that can be "
- "encoded in Latin-1"
- )
- with pytest.raises(ValueError, match=msg):
- with tm.ensure_clean() as path:
- mixed_frame.to_stata(path, variable_labels=variable_labels_utf8)
- variable_labels_long = {
- "a": "City Rank",
- "b": "City Exponent",
- "c": "A very, very, very long variable label "
- "that is too long for Stata which means "
- "that it has more than 80 characters",
- }
- msg = "Variable labels must be 80 characters or fewer"
- with pytest.raises(ValueError, match=msg):
- with tm.ensure_clean() as path:
- mixed_frame.to_stata(path, variable_labels=variable_labels_long)
- def test_default_date_conversion(self):
- # GH 12259
- dates = [
- dt.datetime(1999, 12, 31, 12, 12, 12, 12000),
- dt.datetime(2012, 12, 21, 12, 21, 12, 21000),
- dt.datetime(1776, 7, 4, 7, 4, 7, 4000),
- ]
- original = DataFrame(
- {
- "nums": [1.0, 2.0, 3.0],
- "strs": ["apple", "banana", "cherry"],
- "dates": dates,
- }
- )
- with tm.ensure_clean() as path:
- original.to_stata(path, write_index=False)
- reread = read_stata(path, convert_dates=True)
- tm.assert_frame_equal(original, reread)
- original.to_stata(path, write_index=False, convert_dates={"dates": "tc"})
- direct = read_stata(path, convert_dates=True)
- tm.assert_frame_equal(reread, direct)
- dates_idx = original.columns.tolist().index("dates")
- original.to_stata(path, write_index=False, convert_dates={dates_idx: "tc"})
- direct = read_stata(path, convert_dates=True)
- tm.assert_frame_equal(reread, direct)
- def test_unsupported_type(self):
- original = DataFrame({"a": [1 + 2j, 2 + 4j]})
- msg = "Data type complex128 not supported"
- with pytest.raises(NotImplementedError, match=msg):
- with tm.ensure_clean() as path:
- original.to_stata(path)
- def test_unsupported_datetype(self):
- dates = [
- dt.datetime(1999, 12, 31, 12, 12, 12, 12000),
- dt.datetime(2012, 12, 21, 12, 21, 12, 21000),
- dt.datetime(1776, 7, 4, 7, 4, 7, 4000),
- ]
- original = DataFrame(
- {
- "nums": [1.0, 2.0, 3.0],
- "strs": ["apple", "banana", "cherry"],
- "dates": dates,
- }
- )
- msg = "Format %tC not implemented"
- with pytest.raises(NotImplementedError, match=msg):
- with tm.ensure_clean() as path:
- original.to_stata(path, convert_dates={"dates": "tC"})
- dates = pd.date_range("1-1-1990", periods=3, tz="Asia/Hong_Kong")
- original = DataFrame(
- {
- "nums": [1.0, 2.0, 3.0],
- "strs": ["apple", "banana", "cherry"],
- "dates": dates,
- }
- )
- with pytest.raises(NotImplementedError, match="Data type datetime64"):
- with tm.ensure_clean() as path:
- original.to_stata(path)
- def test_repeated_column_labels(self, datapath):
- # GH 13923, 25772
- msg = """
- Value labels for column ethnicsn are not unique. These cannot be converted to
- pandas categoricals.
- Either read the file with `convert_categoricals` set to False or use the
- low level interface in `StataReader` to separately read the values and the
- value_labels.
- The repeated labels are:\n-+\nwolof
- """
- with pytest.raises(ValueError, match=msg):
- read_stata(
- datapath("io", "data", "stata", "stata15.dta"),
- convert_categoricals=True,
- )
- def test_stata_111(self, datapath):
- # 111 is an old version but still used by current versions of
- # SAS when exporting to Stata format. We do not know of any
- # on-line documentation for this version.
- df = read_stata(datapath("io", "data", "stata", "stata7_111.dta"))
- original = DataFrame(
- {
- "y": [1, 1, 1, 1, 1, 0, 0, np.nan, 0, 0],
- "x": [1, 2, 1, 3, np.nan, 4, 3, 5, 1, 6],
- "w": [2, np.nan, 5, 2, 4, 4, 3, 1, 2, 3],
- "z": ["a", "b", "c", "d", "e", "", "g", "h", "i", "j"],
- }
- )
- original = original[["y", "x", "w", "z"]]
- tm.assert_frame_equal(original, df)
- def test_out_of_range_double(self):
- # GH 14618
- df = DataFrame(
- {
- "ColumnOk": [0.0, np.finfo(np.double).eps, 4.49423283715579e307],
- "ColumnTooBig": [0.0, np.finfo(np.double).eps, np.finfo(np.double).max],
- }
- )
- msg = (
- r"Column ColumnTooBig has a maximum value \(.+\) outside the range "
- r"supported by Stata \(.+\)"
- )
- with pytest.raises(ValueError, match=msg):
- with tm.ensure_clean() as path:
- df.to_stata(path)
- def test_out_of_range_float(self):
- original = DataFrame(
- {
- "ColumnOk": [
- 0.0,
- np.finfo(np.float32).eps,
- np.finfo(np.float32).max / 10.0,
- ],
- "ColumnTooBig": [
- 0.0,
- np.finfo(np.float32).eps,
- np.finfo(np.float32).max,
- ],
- }
- )
- original.index.name = "index"
- for col in original:
- original[col] = original[col].astype(np.float32)
- with tm.ensure_clean() as path:
- original.to_stata(path)
- reread = read_stata(path)
- original["ColumnTooBig"] = original["ColumnTooBig"].astype(np.float64)
- expected = original.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(reread.set_index("index"), expected)
- @pytest.mark.parametrize("infval", [np.inf, -np.inf])
- def test_inf(self, infval):
- # GH 45350
- df = DataFrame({"WithoutInf": [0.0, 1.0], "WithInf": [2.0, infval]})
- msg = (
- "Column WithInf contains infinity or -infinity"
- "which is outside the range supported by Stata."
- )
- with pytest.raises(ValueError, match=msg):
- with tm.ensure_clean() as path:
- df.to_stata(path)
- def test_path_pathlib(self):
- df = DataFrame(
- 1.1 * np.arange(120).reshape((30, 4)),
- columns=pd.Index(list("ABCD")),
- index=pd.Index([f"i-{i}" for i in range(30)]),
- )
- df.index.name = "index"
- reader = lambda x: read_stata(x).set_index("index")
- result = tm.round_trip_pathlib(df.to_stata, reader)
- tm.assert_frame_equal(df, result)
- def test_pickle_path_localpath(self):
- df = DataFrame(
- 1.1 * np.arange(120).reshape((30, 4)),
- columns=pd.Index(list("ABCD")),
- index=pd.Index([f"i-{i}" for i in range(30)]),
- )
- df.index.name = "index"
- reader = lambda x: read_stata(x).set_index("index")
- result = tm.round_trip_localpath(df.to_stata, reader)
- tm.assert_frame_equal(df, result)
- @pytest.mark.parametrize("write_index", [True, False])
- def test_value_labels_iterator(self, write_index):
- # GH 16923
- d = {"A": ["B", "E", "C", "A", "E"]}
- df = DataFrame(data=d)
- df["A"] = df["A"].astype("category")
- with tm.ensure_clean() as path:
- df.to_stata(path, write_index=write_index)
- with read_stata(path, iterator=True) as dta_iter:
- value_labels = dta_iter.value_labels()
- assert value_labels == {"A": {0: "A", 1: "B", 2: "C", 3: "E"}}
- def test_set_index(self):
- # GH 17328
- df = DataFrame(
- 1.1 * np.arange(120).reshape((30, 4)),
- columns=pd.Index(list("ABCD")),
- index=pd.Index([f"i-{i}" for i in range(30)]),
- )
- df.index.name = "index"
- with tm.ensure_clean() as path:
- df.to_stata(path)
- reread = read_stata(path, index_col="index")
- tm.assert_frame_equal(df, reread)
- @pytest.mark.parametrize(
- "column", ["ms", "day", "week", "month", "qtr", "half", "yr"]
- )
- def test_date_parsing_ignores_format_details(self, column, datapath):
- # GH 17797
- #
- # Test that display formats are ignored when determining if a numeric
- # column is a date value.
- #
- # All date types are stored as numbers and format associated with the
- # column denotes both the type of the date and the display format.
- #
- # STATA supports 9 date types which each have distinct units. We test 7
- # of the 9 types, ignoring %tC and %tb. %tC is a variant of %tc that
- # accounts for leap seconds and %tb relies on STATAs business calendar.
- df = read_stata(datapath("io", "data", "stata", "stata13_dates.dta"))
- unformatted = df.loc[0, column]
- formatted = df.loc[0, column + "_fmt"]
- assert unformatted == formatted
- def test_writer_117(self, using_infer_string):
- original = DataFrame(
- data=[
- [
- "string",
- "object",
- 1,
- 1,
- 1,
- 1.1,
- 1.1,
- np.datetime64("2003-12-25"),
- "a",
- "a" * 2045,
- "a" * 5000,
- "a",
- ],
- [
- "string-1",
- "object-1",
- 1,
- 1,
- 1,
- 1.1,
- 1.1,
- np.datetime64("2003-12-26"),
- "b",
- "b" * 2045,
- "",
- "",
- ],
- ],
- columns=[
- "string",
- "object",
- "int8",
- "int16",
- "int32",
- "float32",
- "float64",
- "datetime",
- "s1",
- "s2045",
- "srtl",
- "forced_strl",
- ],
- )
- original["object"] = Series(original["object"], dtype=object)
- original["int8"] = Series(original["int8"], dtype=np.int8)
- original["int16"] = Series(original["int16"], dtype=np.int16)
- original["int32"] = original["int32"].astype(np.int32)
- original["float32"] = Series(original["float32"], dtype=np.float32)
- original.index.name = "index"
- original.index = original.index.astype(np.int32)
- copy = original.copy()
- with tm.ensure_clean() as path:
- original.to_stata(
- path,
- convert_dates={"datetime": "tc"},
- convert_strl=["forced_strl"],
- version=117,
- )
- written_and_read_again = self.read_dta(path)
- expected = original[:]
- if using_infer_string:
- # object dtype (with only strings/None) comes back as string dtype
- expected["object"] = expected["object"].astype("str")
- tm.assert_frame_equal(
- written_and_read_again.set_index("index"),
- expected,
- )
- tm.assert_frame_equal(original, copy)
- def test_convert_strl_name_swap(self):
- original = DataFrame(
- [["a" * 3000, "A", "apple"], ["b" * 1000, "B", "banana"]],
- columns=["long1" * 10, "long", 1],
- )
- original.index.name = "index"
- with tm.assert_produces_warning(InvalidColumnName):
- with tm.ensure_clean() as path:
- original.to_stata(path, convert_strl=["long", 1], version=117)
- reread = self.read_dta(path)
- reread = reread.set_index("index")
- reread.columns = original.columns
- tm.assert_frame_equal(reread, original, check_index_type=False)
- def test_invalid_date_conversion(self):
- # GH 12259
- dates = [
- dt.datetime(1999, 12, 31, 12, 12, 12, 12000),
- dt.datetime(2012, 12, 21, 12, 21, 12, 21000),
- dt.datetime(1776, 7, 4, 7, 4, 7, 4000),
- ]
- original = DataFrame(
- {
- "nums": [1.0, 2.0, 3.0],
- "strs": ["apple", "banana", "cherry"],
- "dates": dates,
- }
- )
- with tm.ensure_clean() as path:
- msg = "convert_dates key must be a column or an integer"
- with pytest.raises(ValueError, match=msg):
- original.to_stata(path, convert_dates={"wrong_name": "tc"})
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_nonfile_writing(self, version):
- # GH 21041
- bio = io.BytesIO()
- df = DataFrame(
- 1.1 * np.arange(120).reshape((30, 4)),
- columns=pd.Index(list("ABCD")),
- index=pd.Index([f"i-{i}" for i in range(30)]),
- )
- df.index.name = "index"
- with tm.ensure_clean() as path:
- df.to_stata(bio, version=version)
- bio.seek(0)
- with open(path, "wb") as dta:
- dta.write(bio.read())
- reread = read_stata(path, index_col="index")
- tm.assert_frame_equal(df, reread)
- def test_gzip_writing(self):
- # writing version 117 requires seek and cannot be used with gzip
- df = DataFrame(
- 1.1 * np.arange(120).reshape((30, 4)),
- columns=pd.Index(list("ABCD")),
- index=pd.Index([f"i-{i}" for i in range(30)]),
- )
- df.index.name = "index"
- with tm.ensure_clean() as path:
- with gzip.GzipFile(path, "wb") as gz:
- df.to_stata(gz, version=114)
- with gzip.GzipFile(path, "rb") as gz:
- reread = read_stata(gz, index_col="index")
- tm.assert_frame_equal(df, reread)
- def test_unicode_dta_118(self, datapath):
- unicode_df = self.read_dta(datapath("io", "data", "stata", "stata16_118.dta"))
- columns = ["utf8", "latin1", "ascii", "utf8_strl", "ascii_strl"]
- values = [
- ["ραηδας", "PÄNDÄS", "p", "ραηδας", "p"],
- ["ƤĀńĐąŜ", "Ö", "a", "ƤĀńĐąŜ", "a"],
- ["ᴘᴀᴎᴅᴀS", "Ü", "n", "ᴘᴀᴎᴅᴀS", "n"],
- [" ", " ", "d", " ", "d"],
- [" ", "", "a", " ", "a"],
- ["", "", "s", "", "s"],
- ["", "", " ", "", " "],
- ]
- expected = DataFrame(values, columns=columns)
- tm.assert_frame_equal(unicode_df, expected)
- def test_mixed_string_strl(self, using_infer_string):
- # GH 23633
- output = [{"mixed": "string" * 500, "number": 0}, {"mixed": None, "number": 1}]
- output = DataFrame(output)
- output.number = output.number.astype("int32")
- with tm.ensure_clean() as path:
- output.to_stata(path, write_index=False, version=117)
- reread = read_stata(path)
- expected = output.fillna("")
- tm.assert_frame_equal(reread, expected)
- # Check strl supports all None (null)
- output["mixed"] = None
- output.to_stata(
- path, write_index=False, convert_strl=["mixed"], version=117
- )
- reread = read_stata(path)
- expected = output.copy()
- if using_infer_string:
- expected["mixed"] = expected["mixed"].astype("str")
- expected = expected.fillna("")
- tm.assert_frame_equal(reread, expected)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_all_none_exception(self, version):
- output = [{"none": "none", "number": 0}, {"none": None, "number": 1}]
- output = DataFrame(output)
- output["none"] = None
- with tm.ensure_clean() as path:
- with pytest.raises(ValueError, match="Column `none` cannot be exported"):
- output.to_stata(path, version=version)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_invalid_file_not_written(self, version):
- content = "Here is one __�__ Another one __·__ Another one __½__"
- df = DataFrame([content], columns=["invalid"])
- with tm.ensure_clean() as path:
- msg1 = (
- r"'latin-1' codec can't encode character '\\ufffd' "
- r"in position 14: ordinal not in range\(256\)"
- )
- msg2 = (
- "'ascii' codec can't decode byte 0xef in position 14: "
- r"ordinal not in range\(128\)"
- )
- with pytest.raises(UnicodeEncodeError, match=f"{msg1}|{msg2}"):
- df.to_stata(path)
- def test_strl_latin1(self):
- # GH 23573, correct GSO data to reflect correct size
- output = DataFrame(
- [["pandas"] * 2, ["þâÑÐŧ"] * 2], columns=["var_str", "var_strl"]
- )
- with tm.ensure_clean() as path:
- output.to_stata(path, version=117, convert_strl=["var_strl"])
- with open(path, "rb") as reread:
- content = reread.read()
- expected = "þâÑÐŧ"
- assert expected.encode("latin-1") in content
- assert expected.encode("utf-8") in content
- gsos = content.split(b"strls")[1][1:-2]
- for gso in gsos.split(b"GSO")[1:]:
- val = gso.split(b"\x00")[-2]
- size = gso[gso.find(b"\x82") + 1]
- assert len(val) == size - 1
- def test_encoding_latin1_118(self, datapath):
- # GH 25960
- msg = """
- One or more strings in the dta file could not be decoded using utf-8, and
- so the fallback encoding of latin-1 is being used. This can happen when a file
- has been incorrectly encoded by Stata or some other software. You should verify
- the string values returned are correct."""
- # Move path outside of read_stata, or else assert_produces_warning
- # will block pytests skip mechanism from triggering (failing the test)
- # if the path is not present
- path = datapath("io", "data", "stata", "stata1_encoding_118.dta")
- with tm.assert_produces_warning(UnicodeWarning, filter_level="once") as w:
- encoded = read_stata(path)
- # with filter_level="always", produces 151 warnings which can be slow
- assert len(w) == 1
- assert w[0].message.args[0] == msg
- expected = DataFrame([["Düsseldorf"]] * 151, columns=["kreis1849"])
- tm.assert_frame_equal(encoded, expected)
- @pytest.mark.slow
- def test_stata_119(self, datapath):
- # Gzipped since contains 32,999 variables and uncompressed is 20MiB
- # Just validate that the reader reports correct number of variables
- # to avoid high peak memory
- with gzip.open(
- datapath("io", "data", "stata", "stata1_119.dta.gz"), "rb"
- ) as gz:
- with StataReader(gz) as reader:
- reader._ensure_open()
- assert reader._nvar == 32999
- @pytest.mark.filterwarnings("ignore:Downcasting behavior:FutureWarning")
- @pytest.mark.parametrize("version", [118, 119, None])
- def test_utf8_writer(self, version):
- cat = pd.Categorical(["a", "β", "ĉ"], ordered=True)
- data = DataFrame(
- [
- [1.0, 1, "ᴬ", "ᴀ relatively long ŝtring"],
- [2.0, 2, "ᴮ", ""],
- [3.0, 3, "ᴰ", None],
- ],
- columns=["Å", "β", "ĉ", "strls"],
- )
- data["ᴐᴬᵀ"] = cat
- variable_labels = {
- "Å": "apple",
- "β": "ᵈᵉᵊ",
- "ĉ": "ᴎტჄႲႳႴႶႺ",
- "strls": "Long Strings",
- "ᴐᴬᵀ": "",
- }
- data_label = "ᴅaᵀa-label"
- value_labels = {"β": {1: "label", 2: "æøå", 3: "ŋot valid latin-1"}}
- data["β"] = data["β"].astype(np.int32)
- with tm.ensure_clean() as path:
- writer = StataWriterUTF8(
- path,
- data,
- data_label=data_label,
- convert_strl=["strls"],
- variable_labels=variable_labels,
- write_index=False,
- version=version,
- value_labels=value_labels,
- )
- writer.write_file()
- reread_encoded = read_stata(path)
- # Missing is intentionally converted to empty strl
- data["strls"] = data["strls"].fillna("")
- # Variable with value labels is reread as categorical
- data["β"] = (
- data["β"].replace(value_labels["β"]).astype("category").cat.as_ordered()
- )
- tm.assert_frame_equal(data, reread_encoded)
- with StataReader(path) as reader:
- assert reader.data_label == data_label
- assert reader.variable_labels() == variable_labels
- data.to_stata(path, version=version, write_index=False)
- reread_to_stata = read_stata(path)
- tm.assert_frame_equal(data, reread_to_stata)
- def test_writer_118_exceptions(self):
- df = DataFrame(np.zeros((1, 33000), dtype=np.int8))
- with tm.ensure_clean() as path:
- with pytest.raises(ValueError, match="version must be either 118 or 119."):
- StataWriterUTF8(path, df, version=117)
- with tm.ensure_clean() as path:
- with pytest.raises(ValueError, match="You must use version 119"):
- StataWriterUTF8(path, df, version=118)
- @pytest.mark.parametrize(
- "dtype_backend",
- ["numpy_nullable", pytest.param("pyarrow", marks=td.skip_if_no("pyarrow"))],
- )
- def test_read_write_ea_dtypes(self, dtype_backend):
- df = DataFrame(
- {
- "a": [1, 2, None],
- "b": ["a", "b", "c"],
- "c": [True, False, None],
- "d": [1.5, 2.5, 3.5],
- "e": pd.date_range("2020-12-31", periods=3, freq="D"),
- },
- index=pd.Index([0, 1, 2], name="index"),
- )
- df = df.convert_dtypes(dtype_backend=dtype_backend)
- df.to_stata("test_stata.dta", version=118)
- with tm.ensure_clean() as path:
- df.to_stata(path)
- written_and_read_again = self.read_dta(path)
- expected = DataFrame(
- {
- "a": [1, 2, np.nan],
- "b": ["a", "b", "c"],
- "c": [1.0, 0, np.nan],
- "d": [1.5, 2.5, 3.5],
- "e": pd.date_range("2020-12-31", periods=3, freq="D"),
- },
- index=pd.Index([0, 1, 2], name="index", dtype=np.int32),
- )
- tm.assert_frame_equal(written_and_read_again.set_index("index"), expected)
- @pytest.mark.parametrize("version", [105, 108, 111, 113, 114])
- def test_backward_compat(version, datapath):
- data_base = datapath("io", "data", "stata")
- ref = os.path.join(data_base, "stata-compat-118.dta")
- old = os.path.join(data_base, f"stata-compat-{version}.dta")
- expected = read_stata(ref)
- old_dta = read_stata(old)
- tm.assert_frame_equal(old_dta, expected, check_dtype=False)
- def test_direct_read(datapath, monkeypatch):
- file_path = datapath("io", "data", "stata", "stata-compat-118.dta")
- # Test that opening a file path doesn't buffer the file.
- with StataReader(file_path) as reader:
- # Must not have been buffered to memory
- assert not reader.read().empty
- assert not isinstance(reader._path_or_buf, io.BytesIO)
- # Test that we use a given fp exactly, if possible.
- with open(file_path, "rb") as fp:
- with StataReader(fp) as reader:
- assert not reader.read().empty
- assert reader._path_or_buf is fp
- # Test that we use a given BytesIO exactly, if possible.
- with open(file_path, "rb") as fp:
- with io.BytesIO(fp.read()) as bio:
- with StataReader(bio) as reader:
- assert not reader.read().empty
- assert reader._path_or_buf is bio
- def test_statareader_warns_when_used_without_context(datapath):
- file_path = datapath("io", "data", "stata", "stata-compat-118.dta")
- with tm.assert_produces_warning(
- ResourceWarning,
- match="without using a context manager",
- ):
- sr = StataReader(file_path)
- sr.read()
- with tm.assert_produces_warning(
- FutureWarning,
- match="is not part of the public API",
- ):
- sr.close()
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- @pytest.mark.parametrize("use_dict", [True, False])
- @pytest.mark.parametrize("infer", [True, False])
- def test_compression(compression, version, use_dict, infer, compression_to_extension):
- file_name = "dta_inferred_compression.dta"
- if compression:
- if use_dict:
- file_ext = compression
- else:
- file_ext = compression_to_extension[compression]
- file_name += f".{file_ext}"
- compression_arg = compression
- if infer:
- compression_arg = "infer"
- if use_dict:
- compression_arg = {"method": compression}
- df = DataFrame(
- np.random.default_rng(2).standard_normal((10, 2)), columns=list("AB")
- )
- df.index.name = "index"
- with tm.ensure_clean(file_name) as path:
- df.to_stata(path, version=version, compression=compression_arg)
- if compression == "gzip":
- with gzip.open(path, "rb") as comp:
- fp = io.BytesIO(comp.read())
- elif compression == "zip":
- with zipfile.ZipFile(path, "r") as comp:
- fp = io.BytesIO(comp.read(comp.filelist[0]))
- elif compression == "tar":
- with tarfile.open(path) as tar:
- fp = io.BytesIO(tar.extractfile(tar.getnames()[0]).read())
- elif compression == "bz2":
- with bz2.open(path, "rb") as comp:
- fp = io.BytesIO(comp.read())
- elif compression == "zstd":
- zstd = pytest.importorskip("zstandard")
- with zstd.open(path, "rb") as comp:
- fp = io.BytesIO(comp.read())
- elif compression == "xz":
- lzma = pytest.importorskip("lzma")
- with lzma.open(path, "rb") as comp:
- fp = io.BytesIO(comp.read())
- elif compression is None:
- fp = path
- reread = read_stata(fp, index_col="index")
- expected = df.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(reread, expected)
- @pytest.mark.parametrize("method", ["zip", "infer"])
- @pytest.mark.parametrize("file_ext", [None, "dta", "zip"])
- def test_compression_dict(method, file_ext):
- file_name = f"test.{file_ext}"
- archive_name = "test.dta"
- df = DataFrame(
- np.random.default_rng(2).standard_normal((10, 2)), columns=list("AB")
- )
- df.index.name = "index"
- with tm.ensure_clean(file_name) as path:
- compression = {"method": method, "archive_name": archive_name}
- df.to_stata(path, compression=compression)
- if method == "zip" or file_ext == "zip":
- with zipfile.ZipFile(path, "r") as zp:
- assert len(zp.filelist) == 1
- assert zp.filelist[0].filename == archive_name
- fp = io.BytesIO(zp.read(zp.filelist[0]))
- else:
- fp = path
- reread = read_stata(fp, index_col="index")
- expected = df.copy()
- expected.index = expected.index.astype(np.int32)
- tm.assert_frame_equal(reread, expected)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- def test_chunked_categorical(version):
- df = DataFrame({"cats": Series(["a", "b", "a", "b", "c"], dtype="category")})
- df.index.name = "index"
- expected = df.copy()
- expected.index = expected.index.astype(np.int32)
- with tm.ensure_clean() as path:
- df.to_stata(path, version=version)
- with StataReader(path, chunksize=2, order_categoricals=False) as reader:
- for i, block in enumerate(reader):
- block = block.set_index("index")
- assert "cats" in block
- tm.assert_series_equal(
- block.cats, expected.cats.iloc[2 * i : 2 * (i + 1)]
- )
- def test_chunked_categorical_partial(datapath):
- dta_file = datapath("io", "data", "stata", "stata-dta-partially-labeled.dta")
- values = ["a", "b", "a", "b", 3.0]
- with StataReader(dta_file, chunksize=2) as reader:
- with tm.assert_produces_warning(CategoricalConversionWarning):
- for i, block in enumerate(reader):
- assert list(block.cats) == values[2 * i : 2 * (i + 1)]
- if i < 2:
- idx = pd.Index(["a", "b"])
- else:
- idx = pd.Index([3.0], dtype="float64")
- tm.assert_index_equal(block.cats.cat.categories, idx)
- with tm.assert_produces_warning(CategoricalConversionWarning):
- with StataReader(dta_file, chunksize=5) as reader:
- large_chunk = reader.__next__()
- direct = read_stata(dta_file)
- tm.assert_frame_equal(direct, large_chunk)
- @pytest.mark.parametrize("chunksize", (-1, 0, "apple"))
- def test_iterator_errors(datapath, chunksize):
- dta_file = datapath("io", "data", "stata", "stata-dta-partially-labeled.dta")
- with pytest.raises(ValueError, match="chunksize must be a positive"):
- with StataReader(dta_file, chunksize=chunksize):
- pass
- def test_iterator_value_labels():
- # GH 31544
- values = ["c_label", "b_label"] + ["a_label"] * 500
- df = DataFrame({f"col{k}": pd.Categorical(values, ordered=True) for k in range(2)})
- with tm.ensure_clean() as path:
- df.to_stata(path, write_index=False)
- expected = pd.Index(["a_label", "b_label", "c_label"])
- with read_stata(path, chunksize=100) as reader:
- for j, chunk in enumerate(reader):
- for i in range(2):
- tm.assert_index_equal(chunk.dtypes.iloc[i].categories, expected)
- tm.assert_frame_equal(chunk, df.iloc[j * 100 : (j + 1) * 100])
- def test_precision_loss():
- df = DataFrame(
- [[sum(2**i for i in range(60)), sum(2**i for i in range(52))]],
- columns=["big", "little"],
- )
- with tm.ensure_clean() as path:
- with tm.assert_produces_warning(
- PossiblePrecisionLoss, match="Column converted from int64 to float64"
- ):
- df.to_stata(path, write_index=False)
- reread = read_stata(path)
- expected_dt = Series([np.float64, np.float64], index=["big", "little"])
- tm.assert_series_equal(reread.dtypes, expected_dt)
- assert reread.loc[0, "little"] == df.loc[0, "little"]
- assert reread.loc[0, "big"] == float(df.loc[0, "big"])
- def test_compression_roundtrip(compression):
- df = DataFrame(
- [[0.123456, 0.234567, 0.567567], [12.32112, 123123.2, 321321.2]],
- index=["A", "B"],
- columns=["X", "Y", "Z"],
- )
- df.index.name = "index"
- with tm.ensure_clean() as path:
- df.to_stata(path, compression=compression)
- reread = read_stata(path, compression=compression, index_col="index")
- tm.assert_frame_equal(df, reread)
- # explicitly ensure file was compressed.
- with tm.decompress_file(path, compression) as fh:
- contents = io.BytesIO(fh.read())
- reread = read_stata(contents, index_col="index")
- tm.assert_frame_equal(df, reread)
- @pytest.mark.parametrize("to_infer", [True, False])
- @pytest.mark.parametrize("read_infer", [True, False])
- def test_stata_compression(
- compression_only, read_infer, to_infer, compression_to_extension
- ):
- compression = compression_only
- ext = compression_to_extension[compression]
- filename = f"test.{ext}"
- df = DataFrame(
- [[0.123456, 0.234567, 0.567567], [12.32112, 123123.2, 321321.2]],
- index=["A", "B"],
- columns=["X", "Y", "Z"],
- )
- df.index.name = "index"
- to_compression = "infer" if to_infer else compression
- read_compression = "infer" if read_infer else compression
- with tm.ensure_clean(filename) as path:
- df.to_stata(path, compression=to_compression)
- result = read_stata(path, compression=read_compression, index_col="index")
- tm.assert_frame_equal(result, df)
- def test_non_categorical_value_labels():
- data = DataFrame(
- {
- "fully_labelled": [1, 2, 3, 3, 1],
- "partially_labelled": [1.0, 2.0, np.nan, 9.0, np.nan],
- "Y": [7, 7, 9, 8, 10],
- "Z": pd.Categorical(["j", "k", "l", "k", "j"]),
- }
- )
- with tm.ensure_clean() as path:
- value_labels = {
- "fully_labelled": {1: "one", 2: "two", 3: "three"},
- "partially_labelled": {1.0: "one", 2.0: "two"},
- }
- expected = {**value_labels, "Z": {0: "j", 1: "k", 2: "l"}}
- writer = StataWriter(path, data, value_labels=value_labels)
- writer.write_file()
- with StataReader(path) as reader:
- reader_value_labels = reader.value_labels()
- assert reader_value_labels == expected
- msg = "Can't create value labels for notY, it wasn't found in the dataset."
- with pytest.raises(KeyError, match=msg):
- value_labels = {"notY": {7: "label1", 8: "label2"}}
- StataWriter(path, data, value_labels=value_labels)
- msg = (
- "Can't create value labels for Z, value labels "
- "can only be applied to numeric columns."
- )
- with pytest.raises(ValueError, match=msg):
- value_labels = {"Z": {1: "a", 2: "k", 3: "j", 4: "i"}}
- StataWriter(path, data, value_labels=value_labels)
- def test_non_categorical_value_label_name_conversion():
- # Check conversion of invalid variable names
- data = DataFrame(
- {
- "invalid~!": [1, 1, 2, 3, 5, 8], # Only alphanumeric and _
- "6_invalid": [1, 1, 2, 3, 5, 8], # Must start with letter or _
- "invalid_name_longer_than_32_characters": [8, 8, 9, 9, 8, 8], # Too long
- "aggregate": [2, 5, 5, 6, 6, 9], # Reserved words
- (1, 2): [1, 2, 3, 4, 5, 6], # Hashable non-string
- }
- )
- value_labels = {
- "invalid~!": {1: "label1", 2: "label2"},
- "6_invalid": {1: "label1", 2: "label2"},
- "invalid_name_longer_than_32_characters": {8: "eight", 9: "nine"},
- "aggregate": {5: "five"},
- (1, 2): {3: "three"},
- }
- expected = {
- "invalid__": {1: "label1", 2: "label2"},
- "_6_invalid": {1: "label1", 2: "label2"},
- "invalid_name_longer_than_32_char": {8: "eight", 9: "nine"},
- "_aggregate": {5: "five"},
- "_1__2_": {3: "three"},
- }
- with tm.ensure_clean() as path:
- with tm.assert_produces_warning(InvalidColumnName):
- data.to_stata(path, value_labels=value_labels)
- with StataReader(path) as reader:
- reader_value_labels = reader.value_labels()
- assert reader_value_labels == expected
- def test_non_categorical_value_label_convert_categoricals_error():
- # Mapping more than one value to the same label is valid for Stata
- # labels, but can't be read with convert_categoricals=True
- value_labels = {
- "repeated_labels": {10: "Ten", 20: "More than ten", 40: "More than ten"}
- }
- data = DataFrame(
- {
- "repeated_labels": [10, 10, 20, 20, 40, 40],
- }
- )
- with tm.ensure_clean() as path:
- data.to_stata(path, value_labels=value_labels)
- with StataReader(path, convert_categoricals=False) as reader:
- reader_value_labels = reader.value_labels()
- assert reader_value_labels == value_labels
- col = "repeated_labels"
- repeats = "-" * 80 + "\n" + "\n".join(["More than ten"])
- msg = f"""
- Value labels for column {col} are not unique. These cannot be converted to
- pandas categoricals.
- Either read the file with `convert_categoricals` set to False or use the
- low level interface in `StataReader` to separately read the values and the
- value_labels.
- The repeated labels are:
- {repeats}
- """
- with pytest.raises(ValueError, match=msg):
- read_stata(path, convert_categoricals=True)
- @pytest.mark.parametrize("version", [114, 117, 118, 119, None])
- @pytest.mark.parametrize(
- "dtype",
- [
- pd.BooleanDtype,
- pd.Int8Dtype,
- pd.Int16Dtype,
- pd.Int32Dtype,
- pd.Int64Dtype,
- pd.UInt8Dtype,
- pd.UInt16Dtype,
- pd.UInt32Dtype,
- pd.UInt64Dtype,
- ],
- )
- def test_nullable_support(dtype, version):
- df = DataFrame(
- {
- "a": Series([1.0, 2.0, 3.0]),
- "b": Series([1, pd.NA, pd.NA], dtype=dtype.name),
- "c": Series(["a", "b", None]),
- }
- )
- dtype_name = df.b.dtype.numpy_dtype.name
- # Only use supported names: no uint, bool or int64
- dtype_name = dtype_name.replace("u", "")
- if dtype_name == "int64":
- dtype_name = "int32"
- elif dtype_name == "bool":
- dtype_name = "int8"
- value = StataMissingValue.BASE_MISSING_VALUES[dtype_name]
- smv = StataMissingValue(value)
- expected_b = Series([1, smv, smv], dtype=object, name="b")
- expected_c = Series(["a", "b", ""], name="c")
- with tm.ensure_clean() as path:
- df.to_stata(path, write_index=False, version=version)
- reread = read_stata(path, convert_missing=True)
- tm.assert_series_equal(df.a, reread.a)
- tm.assert_series_equal(reread.b, expected_b)
- tm.assert_series_equal(reread.c, expected_c)
- def test_empty_frame():
- # GH 46240
- # create an empty DataFrame with int64 and float64 dtypes
- df = DataFrame(data={"a": range(3), "b": [1.0, 2.0, 3.0]}).head(0)
- with tm.ensure_clean() as path:
- df.to_stata(path, write_index=False, version=117)
- # Read entire dataframe
- df2 = read_stata(path)
- assert "b" in df2
- # Dtypes don't match since no support for int32
- dtypes = Series({"a": np.dtype("int32"), "b": np.dtype("float64")})
- tm.assert_series_equal(df2.dtypes, dtypes)
- # read one column of empty .dta file
- df3 = read_stata(path, columns=["a"])
- assert "b" not in df3
- tm.assert_series_equal(df3.dtypes, dtypes.loc[["a"]])
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